PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_051960_ggyu.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 25022.2 Da    PI: 7.0871
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_051960_ggyu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.1e-26959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien +nrqvtfskRr+g+lKK +EL +LCda++ +iifs tgkl++y++
  Bv3_051960_ggyu.t1  9 KRIENRTNRQVTFSKRRQGLLKKTNELAILCDAQIGLIIFSGTGKLHTYPN 59
                        79***********************************************95 PP

2K-box48.14.8e-17831501380
               K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                         +  + +qel+ L++ i+n +++ Rh+lGe+L++L l++L++ eqqLe+sl+ iR++K++ll +   ++
  Bv3_051960_ggyu.t1  83 NRDEIYQELQALREAIHNGEQSMRHYLGENLGPLPLEDLHKHEQQLESSLNIIRARKEQLLQTDNGNM 150
                         567899*******************************************************8876655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.936161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-37160IPR002100Transcription factor, MADS-box
CDDcd002652.21E-40278No hitNo description
SuperFamilySSF554551.06E-30281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-273859IPR002100Transcription factor, MADS-box
PfamPF014866.7E-1682146IPR002487Transcription factor, K-box
PROSITE profilePS5129711.20484178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRGKIEMKR IENRTNRQVT FSKRRQGLLK KTNELAILCD AQIGLIIFSG TGKLHTYPNP  60
TSLEQIIQRY LHVQGIQLPL HDNRDEIYQE LQALREAIHN GEQSMRHYLG ENLGPLPLED  120
LHKHEQQLES SLNIIRARKE QLLQTDNGNM YRWLMGDGQL HEQQQQQVIG QMPFIYGGED  180
QPSSSTILQL ATSSSSPHQY FPYRLQPTHP NLQDYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D6e-17270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C6e-17270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B6e-17270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A6e-17270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3p57_J8e-17270168Myocyte-specific enhancer factor 2A
3p57_I8e-17270168Myocyte-specific enhancer factor 2A
3p57_D8e-17270168Myocyte-specific enhancer factor 2A
3p57_C8e-17270168Myocyte-specific enhancer factor 2A
3p57_B8e-17270168Myocyte-specific enhancer factor 2A
3p57_A8e-17270168Myocyte-specific enhancer factor 2A
3kov_J8e-17270168Myocyte-specific enhancer factor 2A
3kov_I8e-17270168Myocyte-specific enhancer factor 2A
3kov_B8e-17270168Myocyte-specific enhancer factor 2A
3kov_A8e-17270168Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671448.11e-158PREDICTED: MADS-box protein FBP24 isoform X2
SwissprotQ9ATE53e-64FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A0J8CVQ11e-158A0A0J8CVQ1_BETVU; Uncharacterized protein
STRINGVIT_01s0011g01560.t012e-62(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.34e-50MIKC_MADS family protein